The oligonucleotide probe database

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August undefined, 2024

WebApr 26, 2014 · Here, we present PhylOPDb, an online resource for a comprehensive phylogenetic oligonucleotide probe database. PhylOPDb provides a convivial and easy-to-use web interface to browse both regular and explorative 16S rRNA-targeted probes. Such probes set or subset could be used to globally monitor known and unknown prokaryotic … WebRTPrimerDB -- The Real-Time PCR primer and probe database. Search for validated real time PCR primer and probe sequences. SNPbox -- Web-based High-throughput Primer Design …

iFISH is a publically available resource enabling versatile …

WebProbe contains sequences of oligonucleotide probes and results from a wide variety of applications and technologies, including gene silencing experiments (RNAi), gene … WebApr 9, 2024 · To design probes for comparing our oligo database with OligoMiner, we selected the oligos in the OM ‘Balance’ hg19 database that fall within the genomic region targeted by probe 2.22 on chr2 ... texas new carry law

PhylOPDb: a 16S rRNA oligonucleotide probe database …

WebApr 26, 2014 · The oligonucleotide probe database (OPD) ( 17) was proposed in 1996 to collect tested phylogenetic oligonucleotide probes. The last data set of OPD listed 96 … WebApr 9, 2024 · To design probes for comparing our oligo database with OligoMiner, we selected the oligos in the OM ‘Balance’ hg19 database that fall within the genomic region … WebMPDB - Molecular Probe Database. The Molecular Probe Data Base (MPDB) was set up in 1992 with the objective of allowing researchers to retrieve information on molecular probes and synthetic oligonucleotides that had proven useful in real experimental conditions. MPDB includes information on synthetic oligos that can either be used as probes or ... texas new cars sales tax

20110229980 OLIGONUCLEOTIDE PROBE AND USE THEREOF

PCR primers, oligos databases and design tools HSLS

WebprobeBase is a curated database of annotated rRNA-targeted oligonucleotide probes and supporting information. Rapid access to probe, microarray and reference data is achieved … WebNov 24, 2008 · In addition, probeCheck is linked with probe match tools of RDP II and Greengenes, NCBI blast, the Oligonucleotide Properties Calculator, the two-state folding tool of the DINAMelt server and the rRNA-targeted probe database probeBase. texas new carsWebprobeBase is a curated database of rRNA-targeted oligonucleotide probes and primers.. Search Search probeBase for target organisms, probe names, primers, target sites, … texas new casino

"WebJan 30, 2014 · phylogenetic oligonucleotide probe database: Description: PhylOPDb is an online resource for a comprehensive phylogenetic oligonucleotide probe database. PhylODb provides a convivial and easy-to-use web interface to browse both regular and explorative 16S rRNA-targeted probes. Year founded: 2012: Last update: 2014-01-30: Version: v1.0 ... " - The oligonucleotide probe database

The oligonucleotide probe database

Real-Time qRT-PCR - National Center for Biotechnology …

WebJan 1, 2003 · In 1996, Alm and coworkers compiled the Oligonucleotide Probe Database (OPD) that listed 96 PCR primers and probes mainly targeting small-subunit (SSU) and … WebOct 24, 2024 · Oligonucleotide probes. Oligonucleotide probes are short stretches of single-stranded DNA or RNA used to detect the presence of complementary nucleic acid …

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WebAug 24, 2015 · PrimeTime Predesigned qPCR Sequence Database Select primers/probes for qPCR (human, mouse, rat transcriptome). ... Minimum, optimum, and maximum melting temperature for a primer oligo (range 45–75°C) Primer criteria—primer GC (%) Minimum, optimum, and maximum percentage of G and C bases in the primer (range: 20‑80%) WebJul 5, 2024 · While tools exist to efficiently generate genome-scale sets of oligo probes 33,34, to the best of our knowledge no comprehensive database exists to connect the coordinates of the discovered probes ...

WebFinally, multiple Label Probes hybridize to the Amplifiers to form the “leaves” of the tree. A fully assembled signal amplification tree contains 400 Label Probe binding sites. If all target-specific oligonucleotides in a 20-oligonucleotide-pair Probe Set bind to the target RNA transcript, an 8,000-fold amplification can be achieved. WebOligonucleotide Probes for Fluorescence In Situ Hybridization Philip Hugenholtz, Gene W. Tyson, and Linda L. Blackall 1. Introduction Fluorescence in situ hybridization (FISH) of whole cells using 16S rRNA-targeted oligonucleotide probes is a powerful technique with which to evaluate

WebAnother strategy of probe selection is searching for already published probes. Loy and coworkers established an rRNA-targeted oligonucleotide probe database named 'probeBase' with currently more than 1300 entries, … WebApr 26, 2014 · Here, we present PhylOPDb (‘phylogenetic oligonucleotide probe database’), a comprehensive phylogenetic OPD targeting 16S rRNA gene sequences. We used two high-throughput probe design software, PhylGrid and KASpOD, to select both regular and explorative 16S rRNA gene-targeted oligonucleotide probes. PhylOPDb is composed of 74 …

WebOct 1, 2008 · OligoArrayDb is a comprehensive database containing pangenomic oligonucleotide microarray probe sets designed for most of the sequenced genomes that are not covered by commercial catalog arrays.

WebJan 1, 2024 · Here, we present Oligonucleotide Capture Probes for Pathogen Identification Database (OCaPPI-Db), an online capture probe database containing a set of 1,685 … texas new chief schoolWebNov 19, 2024 · 2. COMBO-FISH: principle and applications. In contrast to standard FISH where probes are usually cut and amplified by molecular biology techniques, COMBinatorial Oligonucleotide FISH (COMBO-FISH) follows a completely different strategy for probe design [19, 20, 26, 27].If a genome of a species is sequenced and the sequence is … texas new cdl lawWeb· Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their genomic location. 2.2. CDF files for Reference sequence, Entrez Gene and Exon, ENSEMBL Gene, Transcript and Exon and VEGA Gene, Transcript and Exon · A probe must hit only one genomic location texas new channelWebProbe contains sequences of oligonucleotide probes and results from a wide variety of applications and technologies, including gene silencing experiments (RNAi), gene expression assays, variation analysis, genome mapping, nucleic acid detection, and genotyping studies. ... The Probe database is now searchable as a part of the Entrez database ... texas new chief development programWebThe oligonucleotide probe database. Applied and Environmental Microbiology. 1996;62(10):3557-3559. doi: 10.1128/aem.62.10.3557-3559.1996. Powered by Pure, … texas new cdWebJan 1, 2006 · Easy access to the primer and probe data is possible by using multiple search criteria. Assay reports contain gene information, assay details (such as oligonucleotide sequences, detection chemistry and reaction conditions), publication information, users' experimental evaluation feedback and submitter's contact details. texas new child support lawsWebJan 1, 2024 · Here, we present Oligonucleotide Capture Probes for Pathogen Identification Database (OCaPPI-Db), an online capture probe database containing a set of 1,685 oligonucleotide probes allowing for the detection and identification of 30 biothreat agents up to the species level. texas new china king buffet